Template:  SRS064557_LANL_scaffold_20476 strand: + 1268-1383 ref: 1268-1383
Variable:  SRS064557_LANL_scaffold_20476 strand: + 716-831 alnlen 115 mutations 17 involve-A 17 involve-T 0

1268       CGGTGTCCTGTTCAGCGGTAATGCGAATAACAGCGCGAATGCCGGTTTTGCGTATGCGAATTCGAATAACACGCCCTCGAATACGAATGCGAATGTCAGGTCTCGCCAATGATTT 
           ::::::::::::: ::::: ::::::::::: ::::: :::::::::::::::::::: :::::  : :: :::::::: :::::  :::: ::::: :::::::::  :: :::
716        CGGTGTCCTGTTCGGCGGTGATGCGAATAACGGCGCGCATGCCGGTTTTGCGTATGCGCATTCGTCTTACGCGCCCTCGTATACGGCTGCGTATGTCGGGTCTCGCCTTTGCTTT