Template:  SRS064774_LANL_scaffold_61312 strand: + 50599-50705 ref: 50599-50705
Variable:  SRS064774_LANL_scaffold_61312 strand: + 8596-8702 alnlen 106 mutations 13 involve-A 11 involve-T 0

50599      AGCGAGAATAGTCAGCATAACAGTTGGATATTGAACTTTGGTAGTGGCAACTTGAACAACAACAACAAGTACAACAGTAACTATGTACGTCCTTGCACAGCGTCTA 
           :::::: ::::::::::: :::::::::::::::::::::::::::::  :::: :::::  : :::::: :::::::  ::::::::::::::::::::: : ::
8596       AGCGAGTATAGTCAGCATTACAGTTGGATATTGAACTTTGGTAGTGGCGGCTTGTACAACGGCTACAAGTGCAACAGTGGCTATGTACGTCCTTGCACAGCATTTA 
Template:  SRS064774_LANL_scaffold_61312 strand: + 50599-50705 ref: 50599-50705
Variable:  SRS064774_LANL_scaffold_61312 strand: + 49792-49898 alnlen 106 mutations 16 involve-A 14 involve-T 0

50599      AGCGAGAATAGTCAGCATAACAGTTGGATATTGAACTTTGGTAGTGGCAACTTGAACAACAACAACAAGTACAACAGTAACTATGTACGTCCTTGCACAGCGTCTA 
           ::::::: :::::::::: ::::::::::::::  :::::::::::::::::::  :: : ::  ::::: : ::::: ::: :::::::::::::::::: : ::
49792      AGCGAGAGTAGTCAGCATTACAGTTGGATATTGGGCTTTGGTAGTGGCAACTTGGGCAGCTACGGCAAGTGCTACAGTTACTTTGTACGTCCTTGCACAGCATTTA