Template:  SRS077730_LANL_scaffold_4938 strand: + 34313-34428 ref: 34313-34428
Variable:  SRS077730_LANL_scaffold_4938 strand: + 33582-33697 alnlen 115 mutations 12 involve-A 12 involve-T 0

34313      ACGGTTGCTTATTCGTGGCGGTAATTATGGTAATGGCGGTAACGCCGGGGAGGCTAACGGCAATTTCAACAACCCGCGTTCTATCTCCAATGTGAATGTGGGGCTGTTTTCCGCT 
           :::::::::: ::::::::::: ::::::::  :::::::  :::::::::::::: ::::::::::  : :::::::::::::::::  :::::::::::::::::::::::::
33582      ACGGTTGCTTCTTCGTGGCGGTGATTATGGTCGTGGCGGTTCCGCCGGGGAGGCTAGCGGCAATTTCGGCCACCCGCGTTCTATCTCCGGTGTGAATGTGGGGCTGTTTTCCGCT 
Template:  SRS077730_LANL_scaffold_4938 strand: + 34335-34429 ref: 34313-34428
Variable:  SRS077730_LANL_scaffold_4938 strand: + 33698-33792 alnlen 94 mutations 10 involve-A 10 involve-T 0

34335      AATTATGGTAATGGCGGTAACGCCGGGGAGGCTAACGGCAATTTCAACAACCCGCGTTCTATCTCCAATGTGAATGTGGGGCTGTTTTCCGCTT 
           :::::::::  ::::::: ::::::::::::::  :::: :::::  :::::::::::::::::::  ::::::::::::::::::::::::::
33698      AATTATGGTTCTGGCGGTGACGCCGGGGAGGCTTTCGGCCATTTCTGCAACCCGCGTTCTATCTCCTCTGTGAATGTGGGGCTGTTTTCCGCTT