Template: SRS077730_LANL_scaffold_4938 strand: + 34313-34428 ref: 34313-34428 Variable: SRS077730_LANL_scaffold_4938 strand: + 33582-33697 alnlen 115 mutations 12 involve-A 12 involve-T 0 34313 ACGGTTGCTTATTCGTGGCGGTAATTATGGTAATGGCGGTAACGCCGGGGAGGCTAACGGCAATTTCAACAACCCGCGTTCTATCTCCAATGTGAATGTGGGGCTGTTTTCCGCT :::::::::: ::::::::::: :::::::: ::::::: :::::::::::::: :::::::::: : ::::::::::::::::: ::::::::::::::::::::::::: 33582 ACGGTTGCTTCTTCGTGGCGGTGATTATGGTCGTGGCGGTTCCGCCGGGGAGGCTAGCGGCAATTTCGGCCACCCGCGTTCTATCTCCGGTGTGAATGTGGGGCTGTTTTCCGCT Template: SRS077730_LANL_scaffold_4938 strand: + 34335-34429 ref: 34313-34428 Variable: SRS077730_LANL_scaffold_4938 strand: + 33698-33792 alnlen 94 mutations 10 involve-A 10 involve-T 0 34335 AATTATGGTAATGGCGGTAACGCCGGGGAGGCTAACGGCAATTTCAACAACCCGCGTTCTATCTCCAATGTGAATGTGGGGCTGTTTTCCGCTT ::::::::: ::::::: :::::::::::::: :::: ::::: ::::::::::::::::::: :::::::::::::::::::::::::: 33698 AATTATGGTTCTGGCGGTGACGCCGGGGAGGCTTTCGGCCATTTCTGCAACCCGCGTTCTATCTCCTCTGTGAATGTGGGGCTGTTTTCCGCTT