Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  SRS078176_LANL_scaffold_28758 strand: + 2325-2440 ref: 2325-2440

Variable:  SRS078176_LANL_scaffold_28758 strand: + 1582-1697 alnlen 115 mutations 20 involve-A 20 involve-T 0

GCGTTTTTCTCGTTGCCGGCAACTACAACAATGGAACCAATGCCGGCTCCTGGTACCGCAACGGCAACAACAATTGGAACAACGACAACAACAACGCGTCGTTCCGGGCGGCGGC (Template)
GCGTTTTTCTCGTTGCCGGCTACTGCAACCTTGGTACCTATGCCGGCTCCTGGTGCCGCTACGGCTTCGACATTTGGCTCATCGGCCTCAGCTACGCGTCGTTCCGGGCGGCGGC (Variable)