Template:  JQ680355.1 strand: - 3781-3874 ref: 3782-3875
Variable:  JQ680355.1 strand: - 1727-1820 alnlen 93 mutations 17 involve-A 15 involve-T 0

3874       GCGTCGAACCGTGCGGTTCGCGGGTACAATTCGGCCCGCAACTGGAACAACAACAATGCTACGAACTCCAACCCGAACGTCGGTTTCCGCCCC (revcomp)
           ::::::: ::::::: ::::::::::: :::::::::::  :::: :: ::  :: :::::::  :: :  ::::  ::::::::::::::::
1820       GCGTCGAGCCGTGCGATTCGCGGGTACTATTCGGCCCGCCTCTGGGACGACGGCAGTGCTACGGGCTTCGGCCCGCTCGTCGGTTTCCGCCCC (revcomp)