Template:  JQ680356.1 strand: - 38848-38975 ref: 38849-38976
Variable:  JQ680356.1 strand: - 39481-39608 alnlen 127 mutations 10 involve-A 9 involve-T 1

38975      TGGCTTGCACGCGCTCATTGGCGGTGGCAACTGGAACAACGGGGTTCACGATGGCTCGCGGACTGTGAATTGCAACAATTATCCGTGGAACGTGAACACGAACATTGGCGTGTGGTGCGTCTGTGAC (revcomp)
           ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::  :::::::  ::::::::::::::::  :::: :: :::::: ::::::::::::::::
39608      TGGCTTGCACGCGCTCATTGGCGGTGGCAACTGGAACGACGGGGTTCACGATGGCTCGCGGACTGTGGCTTGCAACTTTTATCCGTGGAACGTGGGCACGTACTTTGGCGCGTGGTGCGTCTGTGAC (revcomp)