Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680356.1 strand: - 38848-38975 ref: 38849-38976

Variable:  JQ680356.1 strand: - 39481-39608 alnlen 127 mutations 10 involve-A 9 involve-T 1

TGGCTTGCACGCGCTCATTGGCGGTGGCAACTGGAACAACGGGGTTCACGATGGCTCGCGGACTGTGAATTGCAACAATTATCCGTGGAACGTGAACACGAACATTGGCGTGTGGTGCGTCTGTGAC (Template)
TGGCTTGCACGCGCTCATTGGCGGTGGCAACTGGAACGACGGGGTTCACGATGGCTCGCGGACTGTGGCTTGCAACTTTTATCCGTGGAACGTGGGCACGTACTTTGGCGCGTGGTGCGTCTGTGAC (Variable)