Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680364.1 strand: + 11620-11730 ref: 11620-11741

Variable:  JQ680364.1 strand: + 11392-11502 alnlen 110 mutations 19 involve-A 18 involve-T 1

GTCACTAAATTAGGTGCTAATTGGAATAATGGCTTGAATACCAGTGCTTTCTATTGGAATCTGAATAATGCTTCTTCTAATCGTAATCGGAATATCAGCAGTCAGTTAGT (Template)
GTCGCTATATTGGGTGCTGATTGGAGTAATGGCTTGAATGCCGGTGCTTTCGCTTGGATTCTGTATAGTGCTTCTTCTCATCGTCATCGGAGTATCGGCGGTCGGTTGGT (Variable)