Template:  JQ680368.1 strand: - 27015-27136 ref: 27012-27137
Variable:  JQ680368.1 strand: - 24986-25107 alnlen 121 mutations 18 involve-A 17 involve-T 1

27136      CGCTGCCATTTGGTGGCTGCGCTCTCCGAACACCAACAATAACAACAACGTCTGGAACGTCAACACCGATGGCTCCAACAACAACAACTGGTACAACAACTCCTATGGTGTTCGCCCCGCT (revcomp)
           :::::::::::::::::::::::::::: :::::  : :::::::: ::::::::  ::::  : :::::::: :::::  :: : :::::: : :: :::::::::::::::::::::::
25107      CGCTGCCATTTGGTGGCTGCGCTCTCCGTACACCGGCTATAACAACCACGTCTGGCGCGTCTTCGCCGATGGCGCCAACCTCAGCGACTGGTGCTACTACTCCTATGGTGTTCGCCCCGCT (revcomp)
Template:  JQ680368.1 strand: - 27012-27116 ref: 27012-27137
Variable:  JQ680368.1 strand: - 10200-10304 alnlen 104 mutations 16 involve-A 15 involve-T 0

27116      GCTCTCCGAACACCAACAATAACAACAACGTCTGGAACGTCAACACCGATGGCTCCAACAACAACAACTGGTACAACAACTCCTATGGTGTTCGCCCCGCTCTG (revcomp)
           :::::::: ::::: :: :: ::::: ::::::::  ::::  ::::::::::::: :: ::: : :::::::: :: ::::::::::::::::::::::: ::
10304      GCTCTCCGGACACCGACGATTACAACTACGTCTGGCGCGTCCGCACCGATGGCTCCTACGACATCTACTGGTACTACTACTCCTATGGTGTTCGCCCCGCTTTG (revcomp)