Template: JQ680368.1 strand: - 27015-27136 ref: 27012-27137 Variable: JQ680368.1 strand: - 24986-25107 alnlen 121 mutations 18 involve-A 17 involve-T 1 27136 CGCTGCCATTTGGTGGCTGCGCTCTCCGAACACCAACAATAACAACAACGTCTGGAACGTCAACACCGATGGCTCCAACAACAACAACTGGTACAACAACTCCTATGGTGTTCGCCCCGCT (revcomp) :::::::::::::::::::::::::::: ::::: : :::::::: :::::::: :::: : :::::::: ::::: :: : :::::: : :: ::::::::::::::::::::::: 25107 CGCTGCCATTTGGTGGCTGCGCTCTCCGTACACCGGCTATAACAACCACGTCTGGCGCGTCTTCGCCGATGGCGCCAACCTCAGCGACTGGTGCTACTACTCCTATGGTGTTCGCCCCGCT (revcomp) Template: JQ680368.1 strand: - 27012-27116 ref: 27012-27137 Variable: JQ680368.1 strand: - 10200-10304 alnlen 104 mutations 16 involve-A 15 involve-T 0 27116 GCTCTCCGAACACCAACAATAACAACAACGTCTGGAACGTCAACACCGATGGCTCCAACAACAACAACTGGTACAACAACTCCTATGGTGTTCGCCCCGCTCTG (revcomp) :::::::: ::::: :: :: ::::: :::::::: :::: ::::::::::::: :: ::: : :::::::: :: ::::::::::::::::::::::: :: 10304 GCTCTCCGGACACCGACGATTACAACTACGTCTGGCGCGTCCGCACCGATGGCTCCTACGACATCTACTGGTACTACTACTCCTATGGTGTTCGCCCCGCTTTG (revcomp)