Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680368.1 strand: - 27015-27136 ref: 27012-27137

Variable:  JQ680368.1 strand: - 24986-25107 alnlen 121 mutations 18 involve-A 17 involve-T 1

CGCTGCCATTTGGTGGCTGCGCTCTCCGAACACCAACAATAACAACAACGTCTGGAACGTCAACACCGATGGCTCCAACAACAACAACTGGTACAACAACTCCTATGGTGTTCGCCCCGCT (Template)
CGCTGCCATTTGGTGGCTGCGCTCTCCGTACACCGGCTATAACAACCACGTCTGGCGCGTCTTCGCCGATGGCGCCAACCTCAGCGACTGGTGCTACTACTCCTATGGTGTTCGCCCCGCT (Variable)
Template:  JQ680368.1 strand: - 27012-27116 ref: 27012-27137

Variable:  JQ680368.1 strand: - 10200-10304 alnlen 104 mutations 16 involve-A 15 involve-T 0

GCTCTCCGAACACCAACAATAACAACAACGTCTGGAACGTCAACACCGATGGCTCCAACAACAACAACTGGTACAACAACTCCTATGGTGTTCGCCCCGCTCTG (Template)
GCTCTCCGGACACCGACGATTACAACTACGTCTGGCGCGTCCGCACCGATGGCTCCTACGACATCTACTGGTACTACTACTCCTATGGTGTTCGCCCCGCTTTG (Variable)