Template:  JQ680372.1 strand: + 2108-2228 ref: 2108-2228
Variable:  JQ680372.1 strand: + 1742-1862 alnlen 120 mutations 16 involve-A 16 involve-T 0

2108       TCTTCGTGTCCGCCTCTCCGGTGCTAACGCTAACAATGGCACGAATGCAGGGGCGTTTGCTACGAATACGAACAATGCAGCCTCGAATTCGAATGCGAATGTGTCCGCTCCCCTATACTT 
           :::::::::::::::::::::::::  :::::::  ::::::: :::: :::::::::::::::::: :::::  ::: :::::: :::::  :::: :::::::::::::::: : :::
1742       TCTTCGTGTCCGCCTCTCCGGTGCTCGCGCTAACGTTGGCACGGATGCGGGGGCGTTTGCTACGAATTCGAACGGTGCGGCCTCGTATTCGTTTGCGTATGTGTCCGCTCCCCTCTGCTT