Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680372.1 strand: + 2108-2228 ref: 2108-2228

Variable:  JQ680372.1 strand: + 1742-1862 alnlen 120 mutations 16 involve-A 16 involve-T 0

TCTTCGTGTCCGCCTCTCCGGTGCTAACGCTAACAATGGCACGAATGCAGGGGCGTTTGCTACGAATACGAACAATGCAGCCTCGAATTCGAATGCGAATGTGTCCGCTCCCCTATACTT (Template)
TCTTCGTGTCCGCCTCTCCGGTGCTCGCGCTAACGTTGGCACGGATGCGGGGGCGTTTGCTACGAATTCGAACGGTGCGGCCTCGTATTCGTTTGCGTATGTGTCCGCTCCCCTCTGCTT (Variable)