Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680374.1 strand: + 4420-4514 ref: 4420-4514

Variable:  JQ680374.1 strand: + 6492-6586 alnlen 94 mutations 12 involve-A 12 involve-T 0

GCCGGCTCGGCCAACAACGCCCGCAACGTCAACTCTGACGGCACGCTGAACAGGAACAACGCCTACAACGGCAACAACGGCCTGCGCCCCGCTT (Template)
GCCGGCTCGGCCAGCAGCGCCCGCTACGTCATCTCTGACGGCGCGCTGAGCTGGAACAGCGCCTACGACGGCGACGGCGGCCTGCGCCCCGCTT (Variable)
Template:  JQ680374.1 strand: + 4437-4514 ref: 4420-4514

Variable:  JQ680374.1 strand: + 16578-16655 alnlen 77 mutations 7 involve-A 7 involve-T 0

CGCCCGCAACGTCAACTCTGACGGCACGCTGAACAGGAACAACGCCTACAACGGCAACAACGGCCTGCGCCCCGCTT (Template)
CGCCCGCCGCGTCAACTCTGACGGCTCGCTGAACAGGTACAACGCCTACTACGGCCACTACGGCCTGCGCCCCGCTT (Variable)