Template:  AFXK01000001.1 strand: - 1008290-1008394 ref: 1008289-1008395
Variable:  AFXK01000001.1 strand: - 1009683-1009787 alnlen 104 mutations 15 involve-A 13 involve-T 0

1008394    CGCAGAACGGCCCGAACAACGCGTGGATCCAGAACTTCGACGATGGCAACCAGAACAACGACGACAAGGACAACGCACGGCCCGCTTTCGCCGTCCGCAGCATC (revcomp)
           :::::: :::::::  :: :::::::::::::  ::::: ::::::: :::::  : ::::: :::::: : :::::::::::::::::::::::::::: :::
1009787    CGCAGACCGGCCCGCTCAGCGCGTGGATCCAGGGCTTCGGCGATGGCTACCAGCTCTACGACTACAAGGGCTACGCACGGCCCGCTTTCGCCGTCCGCAGAATC (revcomp)
Template:  AFXK01000001.1 strand: - 1008290-1008394 ref: 1008289-1008395
Variable:  AFXK01000001.1 strand: - 1008997-1009101 alnlen 104 mutations 17 involve-A 16 involve-T 0

1008394    CGCAGAACGGCCCGAACAACGCGTGGATCCAGAACTTCGACGATGGCAACCAGAACAACGACGACAAGGACAACGCACGGCCCGCTTTCGCCGTCCGCAGCATC (revcomp)
           ::::: ::::::::  :: :::::::::::::  ::::: :: ::::: :::: ::  ::::: ::::: :  ::::::::::::::::::::::::::: :::
1009101    CGCAGCACGGCCCGTTCAGCGCGTGGATCCAGGGCTTCGGCGGTGGCACCCAGGACTTCGACGTCAAGGGCTTCGCACGGCCCGCTTTCGCCGTCCGCAGAATC (revcomp)