Template:  ALVJ01000038.1 strand: - 53650-53774 ref: 53651-53775
Variable:  ALVJ01000038.1 strand: - 55953-56077 alnlen 124 mutations 10 involve-A 8 involve-T 0

53774      AGATGCTGCGCGGCGGTTCGTGGAACAACAATCCTGAAAACTGTCGTTCGGCGTATCGCAACCACAACAACAACATCAACAACAATGTTGGTTTTCGGGTAGTGGTTGGTGGAGCGAGCGCTCT (revcomp)
           :::::::::::::::::::::::: ::::: ::::: :: :::::::::::::::::::::::::: :::: :::::: : :::::::::::::::::::::::::::::::::::::  ::::
56077      AGATGCTGCGCGGCGGTTCGTGGAGCAACATTCCTGGAAGCTGTCGTTCGGCGTATCGCAACCACAGCAACTACATCAGCTACAATGTTGGTTTTCGGGTAGTGGTTGGTGGAGCGAGGACTCT (revcomp)