Template:  ALVN01000008.1 strand: + 128031-128144 ref: 128031-128144
Variable:  ALVN01000008.1 strand: + 126217-126330 alnlen 113 mutations 12 involve-A 12 involve-T 0

128031     CGGCGGCTCGTGGAACAACAATCCTAGGAATTGCCGCTCCGCCTCGCGCAACAACAATCAACCCGACGACCGCAACAACAATATCGGTTTTCGAGTTAGTTGTGAGCCCCCAG 
           ::::::::::::: ::: : :::::::::::::::::::::::::::::  :: : :::  :::::::::::: ::: :::: ::::::::::::::::::::::::::::::
126217     CGGCGGCTCGTGGGACAGCGATCCTAGGAATTGCCGCTCCGCCTCGCGCGGCAGCTATCGGCCCGACGACCGCGACAGCAATTTCGGTTTTCGAGTTAGTTGTGAGCCCCCAG 
Template:  ALVN01000008.1 strand: + 128031-128144 ref: 128031-128144
Variable:  ALVN01000008.1 strand: + 129111-129224 alnlen 113 mutations 13 involve-A 13 involve-T 0

128031     CGGCGGCTCGTGGAACAACAATCCTAGGAATTGCCGCTCCGCCTCGCGCAACAACAATCAACCCGACGACCGCAACAACAATATCGGTTTTCGAGTTAGTTGTGAGCCCCCAG 
           :::::::::::::  :::::::::: :: ::::::::::::::::::::: :: : :::  :::::::::::: ::  :: ::::::::::::::::::::::::::::::::
129111     CGGCGGCTCGTGGCTCAACAATCCTTGGTATTGCCGCTCCGCCTCGCGCAGCAGCTATCTTCCCGACGACCGCGACTTCATTATCGGTTTTCGAGTTAGTTGTGAGCCCCCAG 
Template:  ALVN01000008.1 strand: + 128031-128127 ref: 128031-128144
Variable:  ALVN01000008.1 strand: - 330655-330751 alnlen 96 mutations 21 involve-A 12 involve-T 3
(on different strand)
128031     CGGCGGCTCGTGGAACAACAATCCTAGGAATTGCCGCTCCGCCTCGCGCAACAACAATCAACCCGACGACCGCAACAACAATATCGGTTTTCGAGT 
           ::: ::::: :::  :: : :::: :::::::::::::::::    :::::: ::    : ::::::::::::  :::: :: :::::::::::::
330751     CGGGGGCTCCTGGGTCAGCTATCCAAGGAATTGCCGCTCCGCTCTCCGCAACGACTTCAATCCCGACGACCGCTTCAACTATGTCGGTTTTCGAGT (revcomp)
Template:  ALVN01000008.1 strand: + 128031-128127 ref: 128031-128144
Variable:  ALVN01000008.1 strand: - 316801-316897 alnlen 96 mutations 24 involve-A 13 involve-T 3
(on different strand)
128031     CGGCGGCTCGTGGAACAACAATCCTAGGAATTGCCGCTCCGCCTCGCGCAACAACAATCAACCCGACGACCGCAACAACAATATCGGTTTTCGAGT 
           ::: ::::: :: :::  : :::: :::  ::::::::::::    ::: :::::    : ::::::  ::::: :::: :: :::::::::::::
316897     CGGGGGCTCCTGTAACTCCTATCCGAGGGGTTGCCGCTCCGCTCTCCGCTACAACTTCAATCCCGACCTCCGCAGCAACGATGTCGGTTTTCGAGT (revcomp)
Template:  ALVN01000008.1 strand: + 128031-128127 ref: 128031-128144
Variable:  ALVN01000008.1 strand: - 322236-322332 alnlen 96 mutations 24 involve-A 15 involve-T 3
(on different strand)
128031     CGGCGGCTCGTGGAACAACAATCCTAGGAATTGCCGCTCCGCCTCGCGCAACAACAATCAACCCGACGACCGCAACAACAATATCGGTTTTCGAGT 
           ::: ::::: ::: ::  : ::::  :: :::::::::::::    ::::::  :    : ::::::: ::::::: ::  :::::::::::::::
322332     CGGGGGCTCCTGGGACTCCGATCCATGGTATTGCCGCTCCGCTCTCCGCAACGTCGTCAATCCCGACGTCCGCAACGACCTTATCGGTTTTCGAGT (revcomp)