Template: AMFJ01002827.1 strand: + 5523-5658 ref: 5523-5658 Variable: AMFJ01002827.1 strand: + 5050-5185 alnlen 135 mutations 19 involve-A 18 involve-T 1 5523 AGGCTCAGTGTGGCGCAACCTCAATGGTAATCGCTATGTTGCGTATCTGAACAGGAACGATTCGAATCGTAAGCTCAACCTCAACAACTTCGACAATGACTGGAATGACCGCTGTCGCTTCGCTGCTGTTCGCAA :::::::::::::::: ::::: ::::: ::::::::::::::::::: :::: ::::::: :::::::::: ::::: :::::::: :: ::::::: : ::::::::::::::::::::::::::: 5050 AGGCTCAGTGTGGCGCCACCTCGATGGTTCTCGCTATGTTGCGTATCTGCGCAGGCGCGATTCGCGTCGTAAGCTCCACCTCCGCAACTTCGGCATTGACTGGCTCGGCCGCTGTCGCTTCGCTGCTGTTCGCAA