Template:  AMFJ01005865.1 strand: + 1220-1342 ref: 1220-1342
Variable:  AMFJ01005865.1 strand: + 770-892 alnlen 122 mutations 18 involve-A 17 involve-T 0

1220       GAGAATGTCGGTGTTCTCTGGGCGGTCAATTGCAATTGGAATGACGATGGCTGGAACGTGAATGCCAACTCCGTCGATGATCCGGATGAGTGGAATGGTGACAATCAGGTGTTCTCGCGAAA 
           :: ::::::::::::::::::::::::  ::::  :::: ::: ::::::::::  :::::::::: ::::::::: :: :::::::::::::  ::::: :  ::::::::::::::: ::
770        GATAATGTCGGTGTTCTCTGGGCGGTCGGTTGCGGTTGGGATGTCGATGGCTGGCGCGTGAATGCCTACTCCGTCGCTGGTCCGGATGAGTGGGGTGGTGGCTCTCAGGTGTTCTCGCGCAA