Template:  AMWB01221839.1 strand: + 443-557 ref: 443-557
Variable:  AMWB01221839.1 strand: + 253-367 alnlen 114 mutations 24 involve-A 22 involve-T 1

443        CTCATTGTCGGCGGCAATGCGAATAATGGTGCGAATGACGGTTTCGCCTACTCGAATTCGAATAACACCCCGTCGAATGCGAATGTGAATATCGGGTCGCAGCTATGCTTTCAA 
           ::: :::::::::::: :::: :: ::::::::  :: ::::::::::: :::: :::::  : :: ::::::::  ::::  ::::  : ::::::::: :::  ::::: ::
253        CTCGTTGTCGGCGGCATTGCGGATTATGGTGCGCTTGGCGGTTTCGCCTGCTCGTATTCGCTTTACGCCCCGTCGTCTGCGCTTGTGCGTCTCGGGTCGCGGCTTCGCTTTGAA