Template:  AQSE01000026.1 strand: - 1202-1271 ref: 1203-1272
Variable:  AQSE01000026.1 strand: - 2080-2149 alnlen 69 mutations 9 involve-A 9 involve-T 0

1271       CTGTCGCTAGGTTCAACGCCAATTCCGACAGGGCGAACCTCAATTGCAACAGGAATCCTCAGAACTCGA (revcomp)
           :::::::: :::::  :::: ::::::::::::::  :::: ::::: ::::::::::::::: :::::
2149       CTGTCGCTGGGTTCGGCGCCGATTCCGACAGGGCGGTCCTCTATTGCGACAGGAATCCTCAGAGCTCGA (revcomp)