Template: BA000019.2 strand: + 4212414-4212550 ref: 4212414-4212550 Variable: BA000019.2 strand: + 4209684-4209820 alnlen 136 mutations 21 involve-A 19 involve-T 1 4212414 TGCGGGGCGGCTCCTGGAACAACAATCCTGAAAACTGCCGTTCCGCGTCCCGCAACAACAACAATAGGGCGGAGCGCGACAACATCAACAACAATATTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGTACTCTTCA ::::::::::::::::: :: :: ::::::: ::::::::::::::::::: :: : ::::::::::: ::::::: :::: : ::: : ::::::::::::::::::::::::::::::: : :::::: 4209684 TGCGGGGCGGCTCCTGGGACGACCTTCCTGAAGGCTGCCGTTCCGCGTCCCGCCTCAGCCTCAATAGGGCGGTGCGCGACCTCATCCTCTACAGTTTTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGGATTCTTCA Template: BA000019.2 strand: + 4212414-4212550 ref: 4212414-4212550 Variable: BA000019.2 strand: + 4210622-4210758 alnlen 136 mutations 23 involve-A 20 involve-T 2 4212414 TGCGGGGCGGCTCCTGGAACAACAATCCTGAAAACTGCCGTTCCGCGTCCCGCAACAACAACAATAGGGCGGAGCGCGACAACATCAACAACAATATTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGTACTCTTCA :::::::::::::::::: : : ::::: : ::::::::::::::::::: ::::::: ::::::::: ::::: : :: : :: :: : ::::::::::::::::::::::::::::::: ::: :::: 4210622 TGCGGGGCGGCTCCTGGAGCTCCTCTCCTGTAGTCTGCCGTTCCGCGTCCCGCGGCAACAACGATAGGGCGGGGCGCGTCTACCGCTACTACGCTGTTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGGACTTTTCA Template: BA000019.2 strand: - 5986361-5986485 ref: 5986362-5986486 Variable: BA000019.2 strand: - 5988228-5988352 alnlen 124 mutations 21 involve-A 13 involve-T 2 5986485 CGACTGCTGCGCGGTGGTTCGTGGAACAACAATCCCAGGAATTGCCGTTCGGCGAATCGCAACAGGAACGCGCGTGACAACAGGAACAACAACGTAGGTTTTCGGGTTGTGGTTGTGCGGGGCA (revcomp) :: :::::::: ::::::::::::::: :: :::::::: :::::::::: :: :::: ::: ::: :::: ::: :::::::: : ::: :::: ::::::::::::::::::::::: 5988352 CGTCTGCTGCGTGGTGGTTCGTGGAACTACTATCCCAGGGGTTGCCGTTCGTTGAGTCGCCTCAGTAACACGCGCGACGACAGGAACGAGCGCGTGGGTTGTCGGGTTGTGGTTGTGCGGGGCA (revcomp) Template: BA000019.2 strand: - 5986381-5986482 ref: 5986362-5986486 Variable: BA000019.2 strand: - 3896383-3896484 alnlen 101 mutations 30 involve-A 15 involve-T 4 5986482 CTGCTGCGCGGTGGTTCGTGGAACAACAATCCCAGGAATTGCCGTTCGGCGAATCGCAACAGGAACGCGCGTGACAACAGGAACAACAACGTAGGTTTTCG (revcomp) ::: :::: :: ::::::::: ::: : :: :::::: :: :: : :: ::::: ::: : ::::::: : : :: : ::: :: :::::::: 3896484 CTGGTGCGTGGCGGTTCGTGGCACAGCCATGCCAGGAGCTGTCGCTGTGCTTATCGCGACATGCACGCGCGCGCGTATCGGCTCTTCAATGTTGGTTTTCG (revcomp)