Template:  CAPH01000002.1 strand: + 11120-11271 ref: 11120-11271
Variable:  CAPH01000002.1 strand: + 9535-9686 alnlen 151 mutations 13 involve-A 13 involve-T 0

11120      TTCCCTGCTGCGGGCCTGCGTAACAACAATAGCGGCGAGTTGGCCAACACGAGCTCCAACGGCTACTATTGGTCCTCGTCGCCGAACTACGGAGGCAACAACAACGCGGGCAACCTCAACTTCAACTCGGGCAACGTCAACCCGCTGAACA 
           ::::::::::::::::::::::::  :::::::::::::::::::: :::::::::: :::::::::::::::::::::::::: ::::::::::::::: :: :::::::: :::: :::::: :::::::  :::: ::::::::::::
9535       TTCCCTGCTGCGGGCCTGCGTAACGGCAATAGCGGCGAGTTGGCCAGCACGAGCTCCTACGGCTACTATTGGTCCTCGTCGCCGTACTACGGAGGCAACA-CAGCGCGGGCAGCCTCTACTTCAGCTCGGGCGGCGTCTACCCGCTGAACA