Template:  CAPH01000015.1 strand: + 44542-44664 ref: 44542-44664
Variable:  CAPH01000015.1 strand: + 44357-44479 alnlen 122 mutations 24 involve-A 22 involve-T 1

44542      TTCTTCGTGGTGTCCTGTTCAGCGGTAATGCGAATAACGGTGCGAATGCAGGCTTCAGCTATGCGAATTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGCTCTCACCTCTGATTT 
           ::::::::::::::: :::: :::::: ::::  : :::::::: :::: :::::: ::: ::::: :::: :: :: ::::::::  : ::: ::::  : ::::::::: ::: :: :::
44357      TTCTTCGTGGTGTCCGGTTCGGCGGTAGTGCGGCTGACGGTGCGTATGCGGGCTTCGGCTGTGCGAGTTCGTATTACGCCCCCTCGGCTGCGACTGCGCTCGTCGGCTCTCGCCTTTGCTTT 
Template:  CAPH01000015.1 strand: + 44587-44663 ref: 44542-44664
Variable:  CAPH01000015.1 strand: + 6116-6192 alnlen 76 mutations 14 involve-A 13 involve-T 0

44587      ATGCAGGCTTCAGCTATGCGAATTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGCTCTCACCTCTGATT 
           :::: :::::: :::::::: :::::::: :: ::::::::  :::: :::::  : ::::::::: ::: :: ::
6116       ATGCGGGCTTCGGCTATGCGTATTCGAATGACGCCCCCTCGTTTACGTATGCGGCCTTCGGCTCTCGCCTTTGCTT