Template: CAPH01000015.1 strand: + 44542-44664 ref: 44542-44664 Variable: CAPH01000015.1 strand: + 44357-44479 alnlen 122 mutations 24 involve-A 22 involve-T 1 44542 TTCTTCGTGGTGTCCTGTTCAGCGGTAATGCGAATAACGGTGCGAATGCAGGCTTCAGCTATGCGAATTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGCTCTCACCTCTGATTT ::::::::::::::: :::: :::::: :::: : :::::::: :::: :::::: ::: ::::: :::: :: :: :::::::: : ::: :::: : ::::::::: ::: :: ::: 44357 TTCTTCGTGGTGTCCGGTTCGGCGGTAGTGCGGCTGACGGTGCGTATGCGGGCTTCGGCTGTGCGAGTTCGTATTACGCCCCCTCGGCTGCGACTGCGCTCGTCGGCTCTCGCCTTTGCTTT Template: CAPH01000015.1 strand: + 44587-44663 ref: 44542-44664 Variable: CAPH01000015.1 strand: + 6116-6192 alnlen 76 mutations 14 involve-A 13 involve-T 0 44587 ATGCAGGCTTCAGCTATGCGAATTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGCTCTCACCTCTGATT :::: :::::: :::::::: :::::::: :: :::::::: :::: ::::: : ::::::::: ::: :: :: 6116 ATGCGGGCTTCGGCTATGCGTATTCGAATGACGCCCCCTCGTTTACGTATGCGGCCTTCGGCTCTCGCCTTTGCTT