Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  CAPH01000015.1 strand: + 44542-44664 ref: 44542-44664

Variable:  CAPH01000015.1 strand: + 44357-44479 alnlen 122 mutations 24 involve-A 22 involve-T 1

TTCTTCGTGGTGTCCTGTTCAGCGGTAATGCGAATAACGGTGCGAATGCAGGCTTCAGCTATGCGAATTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGCTCTCACCTCTGATTT (Template)
TTCTTCGTGGTGTCCGGTTCGGCGGTAGTGCGGCTGACGGTGCGTATGCGGGCTTCGGCTGTGCGAGTTCGTATTACGCCCCCTCGGCTGCGACTGCGCTCGTCGGCTCTCGCCTTTGCTTT (Variable)
Template:  CAPH01000015.1 strand: + 44587-44663 ref: 44542-44664

Variable:  CAPH01000015.1 strand: + 6116-6192 alnlen 76 mutations 14 involve-A 13 involve-T 0

ATGCAGGCTTCAGCTATGCGAATTCGAATAACACCCCCTCGAATACGAATGCGAACATCGGCTCTCACCTCTGATT (Template)
ATGCGGGCTTCGGCTATGCGTATTCGAATGACGCCCCCTCGTTTACGTATGCGGCCTTCGGCTCTCGCCTTTGCTT (Variable)