Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680358.1 strand: + 5598-5725 ref: 5598-5725

Variable:  JQ680358.1 strand: + 4971-5098 alnlen 127 mutations 11 involve-A 11 involve-T 0

TGGCTTGCACGCCCTCATTGGCGGCGGCAACTGGAACAACGGCGTGCATTGCGGCTCCCGGACGGTGAATTGCAACAATTACCCGTGGAACGTGAACACGAACATTGGCGTGTGGTGCGTGTGTGAC (Template)
TGGCTTGCACGCCCTCATTGGCGGCGGCGGCTGGAACGGCGGCGTGCGTTGCGGCTCCCGGACGGTGGGTTGCAACTATTGCCCGTGGAACGTGAACACGTACGTTGGCGTGTGGTGCGTGTGTGAC (Variable)