Template: JQ680360.1 strand: - 6462-6577 ref: 6463-6578 Variable: JQ680360.1 strand: - 7081-7196 alnlen 115 mutations 16 involve-A 16 involve-T 0 6577 AGCGTTTCCCGATTCGTGGTGGCAACTGGAACAACGGTGCGAATGCGGGTCTGTTCTACACGAACTTGAACAACCCTCGCTCCAATTCCAACTGGAACATCGGCTTCCGCTCCGC (revcomp) ::::::::::::::::::::::: :::: : ::::::: ::::::::::::::: :::::::::: ::::::::::::: :::: ::::: : :::::::::::::::: 7196 AGCGTTTCCCGATTCGTGGTGGCGGCTGGGCCGGCGGTGCGCATGCGGGTCTGTTCTGCACGAACTTGTTCAACCCTCGCTCCCTTTCCTACTGGTCCCTCGGCTTCCGCTCCGC (revcomp) Template: JQ680360.1 strand: - 6462-6573 ref: 6463-6578 Variable: JQ680360.1 strand: - 39862-39973 alnlen 111 mutations 18 involve-A 15 involve-T 1 6573 TTTCCCGATTCGTGGTGGCAACTGGAACAACGGTGCGAATGCGGGTCTGTTCTACACGAACTTGAACAACCCTCGCTCCAATTCCAACTGGAACATCGGCTTCCGCTCCGC (revcomp) ::::::: ::::::::::: :::: : ::::::: :::::: :::::: :::: ::::: :: :::::::::::::::: :::::::::::::::::::::::: 39973 TTTCCCGTTTCGTGGTGGCGCGTGGAGCCGCGGTGCGTTTGCGGGCGTGTTCTGCACGGACTTGGGCATCCCTCGCTCCAATTCCGGCTGGAACATCGGCTTCCGCTCCGC (revcomp)