Template:  JQ680360.1 strand: - 6462-6577 ref: 6463-6578
Variable:  JQ680360.1 strand: - 7081-7196 alnlen 115 mutations 16 involve-A 16 involve-T 0

6577       AGCGTTTCCCGATTCGTGGTGGCAACTGGAACAACGGTGCGAATGCGGGTCTGTTCTACACGAACTTGAACAACCCTCGCTCCAATTCCAACTGGAACATCGGCTTCCGCTCCGC (revcomp)
           :::::::::::::::::::::::  ::::  :  ::::::: ::::::::::::::: ::::::::::  :::::::::::::  :::: :::::  : ::::::::::::::::
7196       AGCGTTTCCCGATTCGTGGTGGCGGCTGGGCCGGCGGTGCGCATGCGGGTCTGTTCTGCACGAACTTGTTCAACCCTCGCTCCCTTTCCTACTGGTCCCTCGGCTTCCGCTCCGC (revcomp)
Template:  JQ680360.1 strand: - 6462-6573 ref: 6463-6578
Variable:  JQ680360.1 strand: - 39862-39973 alnlen 111 mutations 18 involve-A 15 involve-T 1

6573       TTTCCCGATTCGTGGTGGCAACTGGAACAACGGTGCGAATGCGGGTCTGTTCTACACGAACTTGAACAACCCTCGCTCCAATTCCAACTGGAACATCGGCTTCCGCTCCGC (revcomp)
           ::::::: :::::::::::   :::: :  :::::::  ::::::  :::::: :::: :::::  :: ::::::::::::::::  ::::::::::::::::::::::::
39973      TTTCCCGTTTCGTGGTGGCGCGTGGAGCCGCGGTGCGTTTGCGGGCGTGTTCTGCACGGACTTGGGCATCCCTCGCTCCAATTCCGGCTGGAACATCGGCTTCCGCTCCGC (revcomp)