Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680360.1 strand: - 6462-6577 ref: 6463-6578

Variable:  JQ680360.1 strand: - 7081-7196 alnlen 115 mutations 16 involve-A 16 involve-T 0

AGCGTTTCCCGATTCGTGGTGGCAACTGGAACAACGGTGCGAATGCGGGTCTGTTCTACACGAACTTGAACAACCCTCGCTCCAATTCCAACTGGAACATCGGCTTCCGCTCCGC (Template)
AGCGTTTCCCGATTCGTGGTGGCGGCTGGGCCGGCGGTGCGCATGCGGGTCTGTTCTGCACGAACTTGTTCAACCCTCGCTCCCTTTCCTACTGGTCCCTCGGCTTCCGCTCCGC (Variable)
Template:  JQ680360.1 strand: - 6462-6573 ref: 6463-6578

Variable:  JQ680360.1 strand: - 39862-39973 alnlen 111 mutations 18 involve-A 15 involve-T 1

TTTCCCGATTCGTGGTGGCAACTGGAACAACGGTGCGAATGCGGGTCTGTTCTACACGAACTTGAACAACCCTCGCTCCAATTCCAACTGGAACATCGGCTTCCGCTCCGC (Template)
TTTCCCGTTTCGTGGTGGCGCGTGGAGCCGCGGTGCGTTTGCGGGCGTGTTCTGCACGGACTTGGGCATCCCTCGCTCCAATTCCGGCTGGAACATCGGCTTCCGCTCCGC (Variable)