Template:  JQ680370.1 strand: - 25675-25789 ref: 25676-25790
Variable:  JQ680370.1 strand: - 26258-26372 alnlen 114 mutations 11 involve-A 10 involve-T 1

25789      GCGCTGCGTGTATCGCGGGGGCAACTGGAACAACGGTGCGAACGCTGGTGTGTTCTCCCTCAACGGCAACAACTCCCGCGGCAATGTGAACACGTACATCGGCTTCCGTGCCGC (revcomp)
           ::::::::::: :::::::::: ::::: ::::::::::::::::::::::::::::::::: ::::  :::::::::::::  ::::  ::::::::::::: ::::::::::
26372      GCGCTGCGTGTTTCGCGGGGGCGACTGGTACAACGGTGCGAACGCTGGTGTGTTCTCCCTCAGCGGCCTCAACTCCCGCGGCCTTGTGGGCACGTACATCGGCGTCCGTGCCGC (revcomp)