Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  JQ680377.1 strand: - 13133-13237 ref: 13134-13238

Variable:  JQ680377.1 strand: - 11147-11251 alnlen 104 mutations 14 involve-A 14 involve-T 0

ACCCCGTACGCCGGCAACGCGTACAATGCGCGCAATGTCAACACGGACGGCAGTCTGAACAACAACAACGCGTACAATGGCAACAATGGCGTTCGGCCGGATTT (Template)
ACCCCGTACGCCGGCTACGCGTACCTTGCGCGCTATGTCTACACGGACGGCAGTCTGGACAACGGCCGCGCGTACCTTGGCAACATTGGCGTTCGGCCGGCTTT (Variable)
Template:  JQ680377.1 strand: - 13153-13237 ref: 13134-13238

Variable:  JQ680377.1 strand: - 36105-36189 alnlen 84 mutations 13 involve-A 13 involve-T 0

ACCCCGTACGCCGGCAACGCGTACAATGCGCGCAATGTCAACACGGACGGCAGTCTGAACAACAACAACGCGTACAATGGCAAC (Template)
ACCCCGTACGCCGGCAACGCGTACTTTGCGCGCTTTGTCTGCGCGGACGGCAGTCTGAGCCACTACGACGCGTACCTTGGCAAC (Variable)
Template:  JQ680377.1 strand: - 13133-13237 ref: 13134-13238

Variable:  JQ680377.1 strand: - 44-148 alnlen 104 mutations 20 involve-A 20 involve-T 0

ACCCCGTACGCCGGCAACGCGTACAATGCGCGCAATGTCAACACGGACGGCAGTCTGAACAACAACAACGCGTACAATGGCAACAATGGCGTTCGGCCGGATTT (Template)
ACCCCGTACGCCGGCCGCGCGTACGGTGCGCGCGGTGTCGGCACGGACGGCAGTCTGGGCTACGACGGCGCGTACTGTGGCTACGGTGGCGTTCGGCCGGCTTT (Variable)