Template:  LBQD01000003.1 strand: + 5918-6044 ref: 5918-6044
Variable:  LBQD01000003.1 strand: + 5177-5303 alnlen 126 mutations 17 involve-A 17 involve-T 0

5918       CGGTACGGGCAATTTCTGGTCCGGTACCGAGTATAATACGACGAATGCGTGGAACGTCAATTTTTCCACGGGCAACACGAACAACAACAATAAGACGAATAGCAACTACGTTCGTTGTGTTCAAGG 
           ::::::::::::::::::::::::::::::::::  ::::::: ::::::::  :::: ::::::::::::::  ::::  :: :  ::::::: ::: ::::  :::::::::::::::::::::
5177       CGGTACGGGCAATTTCTGGTCCGGTACCGAGTATGGTACGACGTATGCGTGGGTCGTCTATTTTTCCACGGGCGGCACGGGCAGCGGCAATAAGGCGACTAGCGGCTACGTTCGTTGTGTTCAAGG 
Template:  LBQD01000003.1 strand: + 96410-96526 ref: 96408-96526
Variable:  LBQD01000003.1 strand: + 95977-96093 alnlen 116 mutations 15 involve-A 13 involve-T 0

96410      TTCGTCGCCAATGTGAACTTTAATTCCGATGGCAGGCTTAAGGTGAGCGTGAACCGGCTCGAGAATGACAATGTCTGGAATGCCGAGAATCGACATCGCTTTGTGTTTCCGAAACT 
           :::::::::  ::::  :::: :::::: ::::::::::  :::::::::: :::::::::::::::   :::::::: :::::::::::::: ::::::::::::::::: ::::
95977      TTCGTCGCCGGTGTGGGCTTTGATTCCGGTGGCAGGCTTTGGGTGAGCGTGCACCGGCTCGAGAATGTGTATGTCTGGGATGCCGAGAATCGATATCGCTTTGTGTTTCCGCAACT