Template:  LBSX01000014.1 strand: + 41219-41336 ref: 41219-41336
Variable:  LBSX01000014.1 strand: + 40709-40826 alnlen 117 mutations 28 involve-A 26 involve-T 1

41219      TGCAATGCGGACGGCAACCGGCTCAATCTGAACTGGAACGATGGTCGGCTCAACTGCGACAACTGGAACTGGGATGACAATGACAACCCGAACATCGCCGTCGCCGCTCTGATGGTG 
           :::: ::::: :::   :::::::  :::: :::::  :: ::::::::::  ::::: :: ::::  ::::: :: : ::: :  ::::  : :::::::::::::::::  ::::
40709      TGCATTGCGGGCGGGCGCCGGCTCCGTCTGGACTGGCGCGGTGGTCGGCTCGCCTGCGGCATCTGGCGCTGGGGTGCCGATGGCTTCCCGGGCCTCGCCGTCGCCGCTCTGGGGGTG