Template:  LCFI01000001.1 strand: + 301488-301621 ref: 301472-301621
Variable:  LCFI01000001.1 strand: - 303096-303229 alnlen 133 mutations 21 involve-A 20 involve-T 1
(on different strand)
301488     CCGATTCCGATGGCAATCCGAACGTCTTTAAACTCAAACGCAATGACGATGGTCTGTGGTTGAATGACAATTGGGCTAAACCGACCAATCAATGGAATCTCGACAATAGGTTTGTCTTCCGTATCCGAAAGTA 
           :::::::::::::: ::::: ::::::::  :::: : :::: ::::::::::::::::::: ::: :  ::::::: : :::::: :::: :::  ::::: : :::::: ::::::::::::::: :::::
303229     CCGATTCCGATGGCTATCCGTACGTCTTTGGACTCGAGCGCAGTGACGATGGTCTGTGGTTGTATGGCCGTTGGGCTGAGCCGACCGATCAGTGGGCTCTCGGCCATAGGTGTGTCTTCCGTATCCGCAAGTA (revcomp)