Template:  LCFO01000002.1 strand: + 110458-110575 ref: 110458-110575
Variable:  LCFO01000002.1 strand: + 110157-110274 alnlen 117 mutations 17 involve-A 17 involve-T 0

110458     TTCGCGCGGTGAACGTGAACTGGAATGACTGGAACGGCAACTGGCATGTGAGCGCCGACGGTGTTGAGAACCCGGACGGGTGGAACGACGGCAACCAGGTTTTCTCCCGAAACTATT 
           ::::::::::: :::::  :::: ::::::::  ::::  :::::::::: ::::::::::::::: :: :::::::::::::: :: ::::: :: :::::::::::: :::: ::
110157     TTCGCGCGGTGGACGTGTTCTGGGATGACTGGCGCGGCCTCTGGCATGTGCGCGCCGACGGTGTTGGGAGCCCGGACGGGTGGAGCGGCGGCAGCCGGGTTTTCTCCCGCAACTCTT