Template:  LCHJ01000007.1 strand: + 54876-54994 ref: 54876-54994
Variable:  LCHJ01000007.1 strand: + 54409-54527 alnlen 118 mutations 13 involve-A 12 involve-T 0

54876      CTGGTGTGCTTCGCGCGGTCTACGTGAACTGGAACGGTGGCGGTTGGAACGTGAATGCGAACTCTGTTGAGTTTCCGTTCAGGTGGAACGAGGGCAACCAGGTCTTCTCCCGCAACTC 
           ::::::::::::::::::::: ::::  ::::: :::::::::::::  :::: :::::  ::::::::::::::::::::::::: ::: ::::: :::::::::::::::::: ::
54409      CTGGTGTGCTTCGCGCGGTCTGCGTGTTCTGGAGCGGTGGCGGTTGGGGCGTGGATGCGGGCTCTGTTGAGTTTCCGTTCAGGTGGGACGTGGGCAGCCAGGTCTTCTCCCGCAATTC