Template:  LCHM01000084.1 strand: + 2690-2806 ref: 2690-2807
Variable:  LCHM01000084.1 strand: - 4353-4469 alnlen 116 mutations 22 involve-A 18 involve-T 2
(on different strand)
2690       GCGCTACGACTCCGACAACGTGCCGTACCTGTACCTCAACGACGACAGGCCGACGCTGAATACGAACTGGAACGACACCGCGAATCCGAACTGGGGTGCGCCGTCCTTCGGTAGTG 
           ::::: :::::::: :  :::::::  ::::: :::: ::::::::  ::::::::::: : ::  ::::  ::::  :::: :::::  ::::::::::::::::::::: ::::
4469       GCGCTGCGACTCCGTCTGCGTGCCGGGCCTGTGCCTCCACGACGACGAGCCGACGCTGAGTGCGTTCTGGGTCGACGACGCGTATCCGTTCTGGGGTGCGCCGTCCTTCGGGAGTG (revcomp)