Template:  LCMF01000033.1 strand: + 2854-2978 ref: 2854-2978
Variable:  LCMF01000033.1 strand: + 2455-2579 alnlen 124 mutations 22 involve-A 22 involve-T 0

2854       TGGAACGCTCGACTGACGGCAACCTCGTGAACGTGGGCAATGCCGATTCCGACGGTGTGAACGTCGACAACGACAACCCGAGGAACTCGAACGACAATCTCGGCGTCCGCTTCTCCCGAAGTGT 
           ::: ::::::::::: :::: ::::::::  :::::::  ::::: ::::: :::::::  ::::: :: :: :  :::::::  ::::: :: : :::::::::::::::::::::: :::::
2455       TGGCACGCTCGACTGGCGGCTACCTCGTGCGCGTGGGCTGTGCCGTTTCCGGCGGTGTGGGCGTCGGCAGCGGCGGCCCGAGGGGCTCGAGCGGCGATCTCGGCGTCCGCTTCTCCCGCAGTGT 
Template:  LCMF01000033.1 strand: + 2859-2975 ref: 2854-2978
Variable:  LCMF01000033.1 strand: + 5133-5249 alnlen 116 mutations 19 involve-A 19 involve-T 0

2859       CGCTCGACTGACGGCAACCTCGTGAACGTGGGCAATGCCGATTCCGACGGTGTGAACGTCGACAACGACAACCCGAGGAACTCGAACGACAATCTCGGCGTCCGCTTCTCCCGAAG 
           :::::::::: :::: :::::::: :::::::: :::::::::::: :::::::  ::::: : ::: :  :::: ::  ::::  :::: :::::::::::::::::::::: ::
5133       CGCTCGACTGTCGGCTACCTCGTGTACGTGGGCTATGCCGATTCCGTCGGTGTGGGCGTCGGCGACGGCCTCCCGTGGTCCTCGCGCGACGATCTCGGCGTCCGCTTCTCCCGCAG