Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  LCMF01000033.1 strand: + 2854-2978 ref: 2854-2978

Variable:  LCMF01000033.1 strand: + 2455-2579 alnlen 124 mutations 22 involve-A 22 involve-T 0

TGGAACGCTCGACTGACGGCAACCTCGTGAACGTGGGCAATGCCGATTCCGACGGTGTGAACGTCGACAACGACAACCCGAGGAACTCGAACGACAATCTCGGCGTCCGCTTCTCCCGAAGTGT (Template)
TGGCACGCTCGACTGGCGGCTACCTCGTGCGCGTGGGCTGTGCCGTTTCCGGCGGTGTGGGCGTCGGCAGCGGCGGCCCGAGGGGCTCGAGCGGCGATCTCGGCGTCCGCTTCTCCCGCAGTGT (Variable)
Template:  LCMF01000033.1 strand: + 2859-2975 ref: 2854-2978

Variable:  LCMF01000033.1 strand: + 5133-5249 alnlen 116 mutations 19 involve-A 19 involve-T 0

CGCTCGACTGACGGCAACCTCGTGAACGTGGGCAATGCCGATTCCGACGGTGTGAACGTCGACAACGACAACCCGAGGAACTCGAACGACAATCTCGGCGTCCGCTTCTCCCGAAG (Template)
CGCTCGACTGTCGGCTACCTCGTGTACGTGGGCTATGCCGATTCCGTCGGTGTGGGCGTCGGCGACGGCCTCCCGTGGTCCTCGCGCGACGATCTCGGCGTCCGCTTCTCCCGCAG (Variable)