Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_003272.1 strand: + 4212414-4212550 ref: 4212414-4212550

Variable:  NC_003272.1 strand: + 4209684-4209820 alnlen 136 mutations 21 involve-A 19 involve-T 1

TGCGGGGCGGCTCCTGGAACAACAATCCTGAAAACTGCCGTTCCGCGTCCCGCAACAACAACAATAGGGCGGAGCGCGACAACATCAACAACAATATTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGTACTCTTCA (Template)
TGCGGGGCGGCTCCTGGGACGACCTTCCTGAAGGCTGCCGTTCCGCGTCCCGCCTCAGCCTCAATAGGGCGGTGCGCGACCTCATCCTCTACAGTTTTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGGATTCTTCA (Variable)
Template:  NC_003272.1 strand: + 4212414-4212550 ref: 4212414-4212550

Variable:  NC_003272.1 strand: + 4210622-4210758 alnlen 136 mutations 23 involve-A 20 involve-T 2

TGCGGGGCGGCTCCTGGAACAACAATCCTGAAAACTGCCGTTCCGCGTCCCGCAACAACAACAATAGGGCGGAGCGCGACAACATCAACAACAATATTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGTACTCTTCA (Template)
TGCGGGGCGGCTCCTGGAGCTCCTCTCCTGTAGTCTGCCGTTCCGCGTCCCGCGGCAACAACGATAGGGCGGGGCGCGTCTACCGCTACTACGCTGTTGGTTTTCGTGTTGTCTGCGCGTTCGGGAGGACTTTTCA (Variable)
Template:  NC_003272.1 strand: - 5986361-5986485 ref: 5986362-5986486

Variable:  NC_003272.1 strand: - 5988228-5988352 alnlen 124 mutations 21 involve-A 13 involve-T 2

CGACTGCTGCGCGGTGGTTCGTGGAACAACAATCCCAGGAATTGCCGTTCGGCGAATCGCAACAGGAACGCGCGTGACAACAGGAACAACAACGTAGGTTTTCGGGTTGTGGTTGTGCGGGGCA (Template)
CGTCTGCTGCGTGGTGGTTCGTGGAACTACTATCCCAGGGGTTGCCGTTCGTTGAGTCGCCTCAGTAACACGCGCGACGACAGGAACGAGCGCGTGGGTTGTCGGGTTGTGGTTGTGCGGGGCA (Variable)
Template:  NC_003272.1 strand: - 5986381-5986482 ref: 5986362-5986486

Variable:  NC_003272.1 strand: - 3896383-3896484 alnlen 101 mutations 30 involve-A 15 involve-T 4

CTGCTGCGCGGTGGTTCGTGGAACAACAATCCCAGGAATTGCCGTTCGGCGAATCGCAACAGGAACGCGCGTGACAACAGGAACAACAACGTAGGTTTTCG (Template)
CTGGTGCGTGGCGGTTCGTGGCACAGCCATGCCAGGAGCTGTCGCTGTGCTTATCGCGACATGCACGCGCGCGCGTATCGGCTCTTCAATGTTGGTTTTCG (Variable)