Template:  NC_009428.1 strand: + 1350820-1350940 ref: 1350820-1350940
Variable:  NC_009428.1 strand: + 1350275-1350395 alnlen 120 mutations 10 involve-A 9 involve-T 0

1350820    AGCGGATGCCGATCCGCGGAGGCAACTGGAACAACGGTGCCTCGGCGGGTGTGTGGGCGCTGAACGCGAACAACGCGCGGTCGAACGCGAACACGAACATCGGGTTTCGCCCCGCTTCCG 
           :::::::::::::::::::::::::::::  :::::::::::::::::::::::::::::::  ::::: : :::::::::::: ::::::::::: : :::::::::::::::::: ::
1350275    AGCGGATGCCGATCCGCGGAGGCAACTGGGCCAACGGTGCCTCGGCGGGTGTGTGGGCGCTGGGCGCGACCTACGCGCGGTCGATCGCGAACACGAGCCTCGGGTTTCGCCCCGCTTTCG 
Template:  NC_009428.1 strand: + 1350820-1350940 ref: 1350820-1350940
Variable:  NC_009428.1 strand: - 2122468-2122588 alnlen 120 mutations 10 involve-A 9 involve-T 0
(on different strand)
1350820    AGCGGATGCCGATCCGCGGAGGCAACTGGAACAACGGTGCCTCGGCGGGTGTGTGGGCGCTGAACGCGAACAACGCGCGGTCGAACGCGAACACGAACATCGGGTTTCGCCCCGCTTCCG 
           :::::::::::::::::::::::::::::  :::::::::::::::::::::::::::::::  ::::: : :::::::::::: ::::::::::: : :::::::::::::::::: ::
2122588    AGCGGATGCCGATCCGCGGAGGCAACTGGGCCAACGGTGCCTCGGCGGGTGTGTGGGCGCTGGGCGCGACCTACGCGCGGTCGATCGCGAACACGAGCCTCGGGTTTCGCCCCGCTTTCG (revcomp)