Template: NC_009428.1 strand: + 1350820-1350940 ref: 1350820-1350940 Variable: NC_009428.1 strand: + 1350275-1350395 alnlen 120 mutations 10 involve-A 9 involve-T 0 1350820 AGCGGATGCCGATCCGCGGAGGCAACTGGAACAACGGTGCCTCGGCGGGTGTGTGGGCGCTGAACGCGAACAACGCGCGGTCGAACGCGAACACGAACATCGGGTTTCGCCCCGCTTCCG ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: ::::: : :::::::::::: ::::::::::: : :::::::::::::::::: :: 1350275 AGCGGATGCCGATCCGCGGAGGCAACTGGGCCAACGGTGCCTCGGCGGGTGTGTGGGCGCTGGGCGCGACCTACGCGCGGTCGATCGCGAACACGAGCCTCGGGTTTCGCCCCGCTTTCG Template: NC_009428.1 strand: + 1350820-1350940 ref: 1350820-1350940 Variable: NC_009428.1 strand: - 2122468-2122588 alnlen 120 mutations 10 involve-A 9 involve-T 0 (on different strand) 1350820 AGCGGATGCCGATCCGCGGAGGCAACTGGAACAACGGTGCCTCGGCGGGTGTGTGGGCGCTGAACGCGAACAACGCGCGGTCGAACGCGAACACGAACATCGGGTTTCGCCCCGCTTCCG ::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: ::::: : :::::::::::: ::::::::::: : :::::::::::::::::: :: 2122588 AGCGGATGCCGATCCGCGGAGGCAACTGGGCCAACGGTGCCTCGGCGGGTGTGTGGGCGCTGGGCGCGACCTACGCGCGGTCGATCGCGAACACGAGCCTCGGGTTTCGCCCCGCTTTCG (revcomp)