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Template:  NC_011060.1 strand: - 2274257-2274380 ref: 2274256-2274380
Variable:  NC_011060.1 strand: + 770021-770144 alnlen 123 mutations 14 involve-A 14 involve-T 0
(on different strand)
2274380    CTGCCCGTGCGTTGCGCGGCGGTTCCTGGAACAATAATCCCGACAATCTGCGTTGCTCTGCCCGGAACAACAATCATCCGGCGAACAGGAACAACAATATTGGCTTTCGGGTTGTCCGTTCCA (revcomp)
           ::::::::::::::::::::::::::::::::::::::::::::  ::::::::::::::::::: ::  :: ::::::::::  ::::  :  : :: ::::::::::::::::::::::::
770021     CTGCCCGTGCGTTGCGCGGCGGTTCCTGGAACAATAATCCCGACTTTCTGCGTTGCTCTGCCCGGTACCTCAGTCATCCGGCGCTCAGGGTCGGCTATTTTGGCTTTCGGGTTGTCCGTTCCA 
Template:  NC_011060.1 strand: - 2274257-2274380 ref: 2274256-2274380
Variable:  NC_011060.1 strand: - 2274839-2274962 alnlen 123 mutations 14 involve-A 13 involve-T 1

2274380    CTGCCCGTGCGTTGCGCGGCGGTTCCTGGAACAATAATCCCGACAATCTGCGTTGCTCTGCCCGGAACAACAATCATCCGGCGAACAGGAACAACAATATTGGCTTTCGGGTTGTCCGTTCCA (revcomp)
           :::::::::::::::::::::::::::::: :::  ::::::::  ::::::::::::::::::: :: ::  :::::::::: :::::: :  :::: ::::::::::::::::::::::::
2274962    CTGCCCGTGCGTTGCGCGGCGGTTCCTGGAGCAAGTATCCCGACGGTCTGCGTTGCTCTGCCCGGTACGACCTTCATCCGGCGCACAGGAGCGGCAATGTTGGCTTTCGGGTTGTCCGTTCCA (revcomp)
Template:  NC_011060.1 strand: - 2274257-2274379 ref: 2274256-2274380
Variable:  NC_011060.1 strand: - 2268085-2268207 alnlen 122 mutations 20 involve-A 20 involve-T 0

2274379    TGCCCGTGCGTTGCGCGGCGGTTCCTGGAACAATAATCCCGACAATCTGCGTTGCTCTGCCCGGAACAACAATCATCCGGCGAACAGGAACAACAATATTGGCTTTCGGGTTGTCCGTTCCA (revcomp)
           ::::::::::::::::::::::::::::  : ::  ::::: :  ::::::::::::::::::: ::  :: ::::::::::: : ::  :: :  : ::::::::::::::::::::::::
2268207    TGCCCGTGCGTTGCGCGGCGGTTCCTGGGGCTATGTTCCCGGCGTTCTGCGTTGCTCTGCCCGGTACTTCAGTCATCCGGCGAGCTGGCTCAGCGGTTTTGGCTTTCGGGTTGTCCGTTCCA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417499 ref: 2417370-2417504
Variable:  NC_011060.1 strand: + 1111562-1111692 alnlen 130 mutations 12 involve-A 12 involve-T 0
(on different strand)
2417499    GTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           :::::  ::::::::::::::::::: :::::: : ::::::::::: ::::::::::::::::::::: : :::::::::::::: :::::: ::::  ::::::::::::::::::::::::::::::
1111562    GTTCGCGCCGTGTAATTCGTGGCGGGGGCTGGAGCGACGATGCCGAGTACTGTCGGTCGGCGTATCGGAGCGACAACACCCCCGACTACCGGAGCAACGGCGTGGGCTTCCGCCCGGTTTTCGTCCCGTA 
Template:  NC_011060.1 strand: - 2417369-2417499 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 2430393-2430523 alnlen 130 mutations 14 involve-A 11 involve-T 0

2417499    GTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           ::::::::::::: :::::::::::::::::: :: :::::::::::  ::::::::::::::::::: ::  ::::::::::::: ::::: : ::: :::: ::::::::::: ::::::::::::::
2430523    GTTCGAACCGTGTTATTCGTGGCGGGAGCTGGTACTACGATGCCGAGTTCTGTCGGTCGGCGTATCGGTACTTCAACACCCCCGACTACCGGTATAACTACGTTGGCTTCCGCCCTGTTTTCGTCCCGTA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417501 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 2058400-2058532 alnlen 132 mutations 15 involve-A 14 involve-T 0

2417501    GGGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           ::::::: :::::::::::::::::::: :::::::: ::: :::::   :::::::::::::::::::: :::::::: :::::: : ::::: :: ::  ::::::::::::::::::::::::::::::
2058532    GGGTTCGCACCGTGTAATTCGTGGCGGGGGCTGGAACTACGTTGCCGTTTACTGTCGGTCGGCGTATCGGGACAACAACGCCCCCGGCTACCGGTACGACCTCGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417500 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 2461401-2461532 alnlen 131 mutations 16 involve-A 16 involve-T 0

2417500    GGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           ::::::::::::::  :::::::::::::::::::: ::::::::::: ::::::::::::::: ::::  :  : ::::::::: :  ::::: ::::  ::::::::::::::::::::::::::::::
2461532    GGTTCGAACCGTGTTCTTCGTGGCGGGAGCTGGAACTACGATGCCGAGTACTGTCGGTCGGCGTCTCGGCGCGGCTACACCCCCGGCGGCCGGAGCAACTTCGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417503 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 2419159-2419293 alnlen 134 mutations 19 involve-A 17 involve-T 0

2417503    GTGGGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           :: :::::: ::::::: ::::::::::::::::::::: ::: ::::: :  ::::::::::::::::::::::  :::::::::::    ::::  :: :  ::::::::::::::::::::::::::::::
2419293    GTAGGTTCGGACCGTGTGATTCGTGGCGGGAGCTGGAACTACGGTGCCGTGCGCTGTCGGTCGGCGTATCGGAACGGCAACACCCCCGGTCGCCGGCGCAGCGGCGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417498 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 2414472-2414601 alnlen 129 mutations 19 involve-A 19 involve-T 0

2417498    TTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           ::::  ::::::  ::::::::::: :::::  : ::::::::::: ::::::::::::::::::::  :: :  : :::::: :::::::  :: :::::::::::::::::::::::::::::::::
2414601    TTCGCTCCGTGTGCTTCGTGGCGGGTGCTGGCGCTACGATGCCGAGTACTGTCGGTCGGCGTATCGGGGCAGCTGCGCCCCCGGCAACCGGCGCAGCAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417501 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 2423845-2423977 alnlen 132 mutations 22 involve-A 19 involve-T 2

2417501    GGGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           :::::::  ::::::  ::::::::::: ::::: :: :::  ::::::  :::::::::::::  ::::  :: ::::::::::::: :::::  :: : :::::: ::::::::::::::::::::::::
2423977    GGGTTCGCGCCGTGTTGTTCGTGGCGGGGGCTGGGACTACGCGGCCGAGGTCTGTCGGTCGGCGGCTCGGGGCAGCAACACCCCCGACTACCGGCGCAGCTACGTGGTCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417500 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 1679084-1679215 alnlen 131 mutations 22 involve-A 14 involve-T 0

2417500    GGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           :::::: :::::::::::::::::::: ::::: :: :: ::::: ::: ::::: :::::::: ::::  :   : : :::::: :::::::: :::::: :: ::::: ::::: ::::::::::::::
1679215    GGTTCGTACCGTGTAATTCGTGGCGGGGGCTGGGACGACAATGCCAAGAGCTGTCTGTCGGCGTTTCGGGGCGGTAGCCCCCCCGGCAACCGGAGCAACAATGTAGGCTTTCGCCCTGTTTTCGTCCCGTA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417498 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 2028546-2028675 alnlen 129 mutations 36 involve-A 22 involve-T 3

2417498    TTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           ::::  ::: ::  : ::::: ::  :::::  :: : ::::   : ::::::::::::: : ::: : :  :  : :::::::: :::: : : ::   :: :::::::::: ::: :::::::::::
2028675    TTCGTGCCGGGTCCTGCGTGGTGGCCGCTGGGTCAGCTATGCGAGGTACTGTCGGTCGGCTTTTCGCAGCCTCGGCCCCCCCGACTACCGTAGCTACTTTGTTGGCTTCCGCCTGGTCTTCGTCCCGTA (revcomp)
Template:  NC_011060.1 strand: - 2417369-2417500 ref: 2417370-2417504
Variable:  NC_011060.1 strand: - 2030688-2030819 alnlen 131 mutations 36 involve-A 21 involve-T 4

2417500    GGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (revcomp)
           ::::::  ::::::  : ::::: ::  ::::::::  :  :::   :  :::::::::::: :::::   :: : :: :::::::: :::: : :  ::  :  :::::::::: ::  :::::::::::
2030819    GGTTCGGGCCGTGTCTTGCGTGGTGGCGGCTGGAACGGCAGTGCGAGGGGCTGTCGGTCGGCTTATCGCGGCAGCGACGCCCCCGACTACCGCAGCCGCAGTGCTGGCTTCCGCCTGGCCTTCGTCCCGTA (revcomp)
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