Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_011060.1 strand: - 2274257-2274380 ref: 2274256-2274380

Variable:  NC_011060.1 strand: + 770021-770144 alnlen 123 mutations 14 involve-A 14 involve-T 0

CTGCCCGTGCGTTGCGCGGCGGTTCCTGGAACAATAATCCCGACAATCTGCGTTGCTCTGCCCGGAACAACAATCATCCGGCGAACAGGAACAACAATATTGGCTTTCGGGTTGTCCGTTCCA (Template)
CTGCCCGTGCGTTGCGCGGCGGTTCCTGGAACAATAATCCCGACTTTCTGCGTTGCTCTGCCCGGTACCTCAGTCATCCGGCGCTCAGGGTCGGCTATTTTGGCTTTCGGGTTGTCCGTTCCA (Variable)
Template:  NC_011060.1 strand: - 2274257-2274380 ref: 2274256-2274380

Variable:  NC_011060.1 strand: - 2274839-2274962 alnlen 123 mutations 14 involve-A 13 involve-T 1

CTGCCCGTGCGTTGCGCGGCGGTTCCTGGAACAATAATCCCGACAATCTGCGTTGCTCTGCCCGGAACAACAATCATCCGGCGAACAGGAACAACAATATTGGCTTTCGGGTTGTCCGTTCCA (Template)
CTGCCCGTGCGTTGCGCGGCGGTTCCTGGAGCAAGTATCCCGACGGTCTGCGTTGCTCTGCCCGGTACGACCTTCATCCGGCGCACAGGAGCGGCAATGTTGGCTTTCGGGTTGTCCGTTCCA (Variable)
Template:  NC_011060.1 strand: - 2274257-2274379 ref: 2274256-2274380

Variable:  NC_011060.1 strand: - 2268085-2268207 alnlen 122 mutations 20 involve-A 20 involve-T 0

TGCCCGTGCGTTGCGCGGCGGTTCCTGGAACAATAATCCCGACAATCTGCGTTGCTCTGCCCGGAACAACAATCATCCGGCGAACAGGAACAACAATATTGGCTTTCGGGTTGTCCGTTCCA (Template)
TGCCCGTGCGTTGCGCGGCGGTTCCTGGGGCTATGTTCCCGGCGTTCTGCGTTGCTCTGCCCGGTACTTCAGTCATCCGGCGAGCTGGCTCAGCGGTTTTGGCTTTCGGGTTGTCCGTTCCA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417499 ref: 2417370-2417504

Variable:  NC_011060.1 strand: + 1111562-1111692 alnlen 130 mutations 12 involve-A 12 involve-T 0

GTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
GTTCGCGCCGTGTAATTCGTGGCGGGGGCTGGAGCGACGATGCCGAGTACTGTCGGTCGGCGTATCGGAGCGACAACACCCCCGACTACCGGAGCAACGGCGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417499 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 2430393-2430523 alnlen 130 mutations 14 involve-A 11 involve-T 0

GTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
GTTCGAACCGTGTTATTCGTGGCGGGAGCTGGTACTACGATGCCGAGTTCTGTCGGTCGGCGTATCGGTACTTCAACACCCCCGACTACCGGTATAACTACGTTGGCTTCCGCCCTGTTTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417501 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 2058400-2058532 alnlen 132 mutations 15 involve-A 14 involve-T 0

GGGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
GGGTTCGCACCGTGTAATTCGTGGCGGGGGCTGGAACTACGTTGCCGTTTACTGTCGGTCGGCGTATCGGGACAACAACGCCCCCGGCTACCGGTACGACCTCGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417500 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 2461401-2461532 alnlen 131 mutations 16 involve-A 16 involve-T 0

GGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
GGTTCGAACCGTGTTCTTCGTGGCGGGAGCTGGAACTACGATGCCGAGTACTGTCGGTCGGCGTCTCGGCGCGGCTACACCCCCGGCGGCCGGAGCAACTTCGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417503 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 2419159-2419293 alnlen 134 mutations 19 involve-A 17 involve-T 0

GTGGGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
GTAGGTTCGGACCGTGTGATTCGTGGCGGGAGCTGGAACTACGGTGCCGTGCGCTGTCGGTCGGCGTATCGGAACGGCAACACCCCCGGTCGCCGGCGCAGCGGCGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417498 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 2414472-2414601 alnlen 129 mutations 19 involve-A 19 involve-T 0

TTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
TTCGCTCCGTGTGCTTCGTGGCGGGTGCTGGCGCTACGATGCCGAGTACTGTCGGTCGGCGTATCGGGGCAGCTGCGCCCCCGGCAACCGGCGCAGCAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417501 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 2423845-2423977 alnlen 132 mutations 22 involve-A 19 involve-T 2

GGGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
GGGTTCGCGCCGTGTTGTTCGTGGCGGGGGCTGGGACTACGCGGCCGAGGTCTGTCGGTCGGCGGCTCGGGGCAGCAACACCCCCGACTACCGGCGCAGCTACGTGGTCTTCCGCCCGGTTTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417500 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 1679084-1679215 alnlen 131 mutations 22 involve-A 14 involve-T 0

GGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
GGTTCGTACCGTGTAATTCGTGGCGGGGGCTGGGACGACAATGCCAAGAGCTGTCTGTCGGCGTTTCGGGGCGGTAGCCCCCCCGGCAACCGGAGCAACAATGTAGGCTTTCGCCCTGTTTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417498 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 2028546-2028675 alnlen 129 mutations 36 involve-A 22 involve-T 3

TTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
TTCGTGCCGGGTCCTGCGTGGTGGCCGCTGGGTCAGCTATGCGAGGTACTGTCGGTCGGCTTTTCGCAGCCTCGGCCCCCCCGACTACCGTAGCTACTTTGTTGGCTTCCGCCTGGTCTTCGTCCCGTA (Variable)
Template:  NC_011060.1 strand: - 2417369-2417500 ref: 2417370-2417504

Variable:  NC_011060.1 strand: - 2030688-2030819 alnlen 131 mutations 36 involve-A 21 involve-T 4

GGTTCGAACCGTGTAATTCGTGGCGGGAGCTGGAACAACGATGCCGAGAACTGTCGGTCGGCGTATCGGAACAACAACACCCCCGACAACCGGAACAACAACGTGGGCTTCCGCCCGGTTTTCGTCCCGTA (Template)
GGTTCGGGCCGTGTCTTGCGTGGTGGCGGCTGGAACGGCAGTGCGAGGGGCTGTCGGTCGGCTTATCGCGGCAGCGACGCCCCCGACTACCGCAGCCGCAGTGCTGGCTTCCGCCTGGCCTTCGTCCCGTA (Variable)