Template:  NC_011061.1 strand: - 45640-45720 ref: 45641-45721
Variable:  NC_011061.1 strand: - 47855-47935 alnlen 80 mutations 8 involve-A 8 involve-T 0

45720      ATCGGGCCGGAACCGCGTGAATCGTGGCGGTAGCTGGAACAACGACGCGAGGAACCTGCGGTCAGCGAATCGCAACAACA (revcomp)
           :::::::::: :::::::::::::::::::: ::::: :: ::: :::::::::::::::::: :::::::::  :::::
47935      ATCGGGCCGGTACCGCGTGAATCGTGGCGGTGGCTGGGACTACGTCGCGAGGAACCTGCGGTCGGCGAATCGCGGCAACA (revcomp)
Template:  NC_011061.1 strand: - 45647-45720 ref: 45641-45721
Variable:  NC_011061.1 strand: - 44235-44308 alnlen 73 mutations 12 involve-A 11 involve-T 0

45720      ATCGGGCCGGAACCGCGTGAATCGTGGCGGTAGCTGGAACAACGACGCGAGGAACCTGCGGTCAGCGAATCGC (revcomp)
           ::::::::::  ::::::: ::::::::::::::::: ::   : :::: ::::::::::::: :::  ::::
44308      ATCGGGCCGGGCCCGCGTGCATCGTGGCGGTAGCTGGTACGTTGCCGCGGGGAACCTGCGGTCTGCGTGTCGC (revcomp)