Template: NC_011061.1 strand: - 45640-45720 ref: 45641-45721 Variable: NC_011061.1 strand: - 47855-47935 alnlen 80 mutations 8 involve-A 8 involve-T 0 45720 ATCGGGCCGGAACCGCGTGAATCGTGGCGGTAGCTGGAACAACGACGCGAGGAACCTGCGGTCAGCGAATCGCAACAACA (revcomp) :::::::::: :::::::::::::::::::: ::::: :: ::: :::::::::::::::::: ::::::::: ::::: 47935 ATCGGGCCGGTACCGCGTGAATCGTGGCGGTGGCTGGGACTACGTCGCGAGGAACCTGCGGTCGGCGAATCGCGGCAACA (revcomp) Template: NC_011061.1 strand: - 45647-45720 ref: 45641-45721 Variable: NC_011061.1 strand: - 44235-44308 alnlen 73 mutations 12 involve-A 11 involve-T 0 45720 ATCGGGCCGGAACCGCGTGAATCGTGGCGGTAGCTGGAACAACGACGCGAGGAACCTGCGGTCAGCGAATCGC (revcomp) :::::::::: ::::::: ::::::::::::::::: :: : :::: ::::::::::::: ::: :::: 44308 ATCGGGCCGGGCCCGCGTGCATCGTGGCGGTAGCTGGTACGTTGCCGCGGGGAACCTGCGGTCTGCGTGTCGC (revcomp)