Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_011061.1 strand: - 45640-45720 ref: 45641-45721

Variable:  NC_011061.1 strand: - 47855-47935 alnlen 80 mutations 8 involve-A 8 involve-T 0

ATCGGGCCGGAACCGCGTGAATCGTGGCGGTAGCTGGAACAACGACGCGAGGAACCTGCGGTCAGCGAATCGCAACAACA (Template)
ATCGGGCCGGTACCGCGTGAATCGTGGCGGTGGCTGGGACTACGTCGCGAGGAACCTGCGGTCGGCGAATCGCGGCAACA (Variable)
Template:  NC_011061.1 strand: - 45647-45720 ref: 45641-45721

Variable:  NC_011061.1 strand: - 44235-44308 alnlen 73 mutations 12 involve-A 11 involve-T 0

ATCGGGCCGGAACCGCGTGAATCGTGGCGGTAGCTGGAACAACGACGCGAGGAACCTGCGGTCAGCGAATCGC (Template)
ATCGGGCCGGGCCCGCGTGCATCGTGGCGGTAGCTGGTACGTTGCCGCGGGGAACCTGCGGTCTGCGTGTCGC (Variable)