Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_011420.2 strand: + 1185156-1185258 ref: 1185156-1185258

Variable:  NC_011420.2 strand: + 1157862-1157964 alnlen 102 mutations 9 involve-A 8 involve-T 1

CGGCGGCAACTGGAGCAACGGGTCGAACGCGGGCCTCTTCAACCTGAACCTGAACAACGCCCCGTCGAACTCGAACACGAACATCGGTGGCCGCCTCGCGAA (Template)
CGGCGGCAGCTGGGGCAGCGGGTCGTACGCGGGCCTCTTCAGCCTGACCCTGAACAACGCCCCGGCGAACTCGTGCACGAACATCGGTGGCCGCCTCGCGAA (Variable)
Template:  NC_011420.2 strand: + 1185156-1185258 ref: 1185156-1185258

Variable:  NC_011420.2 strand: + 1184334-1184436 alnlen 102 mutations 12 involve-A 11 involve-T 0

CGGCGGCAACTGGAGCAACGGGTCGAACGCGGGCCTCTTCAACCTGAACCTGAACAACGCCCCGTCGAACTCGAACACGAACATCGGTGGCCGCCTCGCGAA (Template)
CGGCGGCGACTGGAGCAGCGGGTCGTACGCGGGCCTCTTCCCGCTGAACCTGAACAGCGCCCCGTCGTACTCGCACTCGAGCCTCGGTGGCCGCCTCGCGAA (Variable)