Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_012724.2 strand: - 1687264-1687354 ref: 1687265-1687355

Variable:  NC_012724.2 strand: - 1688412-1688502 alnlen 90 mutations 10 involve-A 10 involve-T 0

TCCGGCTGGGCGTGGTGCCAGAACTTCAACAACGGCAACCAGAACAACAACCACCAGAACAACGAGTTCCGAGCCCGAGCCGTCCGCAGA (Template)
TCCGGCTGGGCGTGGTGCCAGGACTTCGGCTACGGCGACCAGGGCAGCAGCCACCAGAACTACGAGTTCCGAGCCCGAGCCGTCCGCAGA (Variable)
Template:  NC_012724.2 strand: - 1687264-1687354 ref: 1687265-1687355

Variable:  NC_012724.2 strand: - 1687905-1687995 alnlen 90 mutations 14 involve-A 14 involve-T 0

TCCGGCTGGGCGTGGTGCCAGAACTTCAACAACGGCAACCAGAACAACAACCACCAGAACAACGAGTTCCGAGCCCGAGCCGTCCGCAGA (Template)
TCCGGCTGGGCGTGGTGCCAGGGCTTCAGCAGCGGCGGCCAGGACTACGGCCGCCAGCTCGACGAGTTCCGAGCCCGAGCCGTCCGCAGA (Variable)