Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_012782.1 strand: - 5713-5836 ref: 5714-5837

Variable:  NC_012782.1 strand: - 5962-6085 alnlen 123 mutations 25 involve-A 24 involve-T 1

TTTCGTGTTACTAAATTAGGTGGTAAATGGAATAATGGTACTAAATGTGGTGCATGGTATCTTAATCTGAATAATACCTCCTCTAATCGCAATCGGAATATCAGCAGTCACTTACTATATGTG (Template)
TTTCGTGTTGCTATATTGGGTGGTAGATGGACTTATGGTGCTAGGTGTGGTGCATGGTTTCTTCATCTGGGTAATGCCTCCTCGGATCGCGTTCGGAGTGTCGGCGGTCGCTTGCTGTATGTG (Variable)