Template: NC_013194.1 strand: - 3552060-3552187 ref: 3552059-3552188 Variable: NC_013194.1 strand: - 3554810-3554937 alnlen 127 mutations 16 involve-A 15 involve-T 0 3552187 GTGTGTCCGAGCGCGCGCTACGCGGCGGCTCCTGGAACAACGACGCCAGGAACGTCCGCTCGGCGAACCGCAACGCGAACGCGCCCGACAACGCCAACCAGGACGTCGGTTTCCGCTTTGCCCTGAG (revcomp) ::::::::: ::::::::::::::::::::::::: :: :: :::: ::: ::::::::::::: ::::: :::: ::::::::: :: :::: ::: :: :::::::::::::::::::::::: 3554937 GTGTGTCCGGGCGCGCGCTACGCGGCGGCTCCTGGTACGACTTCGCCTGGAGCGTCCGCTCGGCGTACCGCTTCGCGTACGCGCCCGGCAGCGCCGACCGGGGCGTCGGTTTCCGCTTTGCCCTGAG (revcomp) Template: NC_013194.1 strand: - 3552060-3552188 ref: 3552059-3552188 Variable: NC_013194.1 strand: - 3551081-3551209 alnlen 128 mutations 32 involve-A 17 involve-T 3 3552188 AGTGTGTCCGAGCGCGCGCTACGCGGCGGCTCCTGGAACAACGACGCCAGGAACGTCCGCTCGGCGAACCGCAACGCGAACGCGCCCGACAACGCCAACCAGGACGTCGGTTTCCGCTTTGCCCTGAG (revcomp) :::::: ::: :::: :::: ::::::::::: ::: : :::: ::: : :: : :::::::: :::: :: : :::: ::::: : : :::: ::: ::::::::::::::: ::::: 3551209 AGTGTGGCCGCGCGCACGCTGCGCGGCGGCTCTTGGCTCTACGATCCCATGGGCGCCGGCTCGGCGTTCCGCCGCGGGTTCGCGTCCGACGGCTCTCTCCAGCACGACGGTTTCCGCTTTGCACTGAG (revcomp) Template: NC_013194.1 strand: - 2656562-2656700 ref: 2656563-2656701 Variable: NC_013194.1 strand: - 2656868-2657006 alnlen 138 mutations 22 involve-A 17 involve-T 1 2656700 TGGGAAGGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGAACAACAACCGTGAGAACGCGCGCTGTGCCTACCGCAACAGCACCCATCCCGGCAACCGCAACAACAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCACAT (revcomp) ::: : : :::::::::::::::::::::::::::: :: :::::::: : :::::: :::::::::::: :: : ::: ::::::: ::::: : :::::::::::::::::::::::::::::::: ::: 2657006 TGGCGATGGCCGGCGCGTGGTGCGCGGCGGCTCGTGGGACTTCAACCGTGGGCTCGCGCGTTGTGCCTACCGCGACTACCCCCTTCCCGGCGACCGCGGCCGCAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCCCAT (revcomp) Template: NC_013194.1 strand: - 2656562-2656700 ref: 2656563-2656701 Variable: NC_013194.1 strand: + 2654977-2655115 alnlen 138 mutations 23 involve-A 19 involve-T 0 (on different strand) 2656700 TGGGAAGGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGAACAACAACCGTGAGAACGCGCGCTGTGCCTACCGCAACAGCACCCATCCCGGCAACCGCAACAACAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCACAT (revcomp) ::: : :::::::::::::::::::::::::::::: :: : ::::: : :::::: ::::::: :::: : ::::::::::::: ::::: :: : :::::::::::::::::::::::::::::: ::: 2654977 TGGCGATGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGGTCAGCGGCCGTGGGTTCGCGCGTTGTGCCTGCCGCGGCGTCACCCATCCCGGCTACCGCGGCAGCTATCTCGGCTTTCGGGTGTTGTGTGTCTCCCCCAT