Template:  NC_013194.1 strand: - 3552060-3552187 ref: 3552059-3552188
Variable:  NC_013194.1 strand: - 3554810-3554937 alnlen 127 mutations 16 involve-A 15 involve-T 0

3552187    GTGTGTCCGAGCGCGCGCTACGCGGCGGCTCCTGGAACAACGACGCCAGGAACGTCCGCTCGGCGAACCGCAACGCGAACGCGCCCGACAACGCCAACCAGGACGTCGGTTTCCGCTTTGCCCTGAG (revcomp)
           ::::::::: ::::::::::::::::::::::::: :: ::  :::: ::: ::::::::::::: :::::  :::: ::::::::: :: :::: ::: :: ::::::::::::::::::::::::
3554937    GTGTGTCCGGGCGCGCGCTACGCGGCGGCTCCTGGTACGACTTCGCCTGGAGCGTCCGCTCGGCGTACCGCTTCGCGTACGCGCCCGGCAGCGCCGACCGGGGCGTCGGTTTCCGCTTTGCCCTGAG (revcomp)
Template:  NC_013194.1 strand: - 3552060-3552188 ref: 3552059-3552188
Variable:  NC_013194.1 strand: - 3551081-3551209 alnlen 128 mutations 32 involve-A 17 involve-T 3

3552188    AGTGTGTCCGAGCGCGCGCTACGCGGCGGCTCCTGGAACAACGACGCCAGGAACGTCCGCTCGGCGAACCGCAACGCGAACGCGCCCGACAACGCCAACCAGGACGTCGGTTTCCGCTTTGCCCTGAG (revcomp)
           :::::: ::: :::: :::: ::::::::::: :::  : ::::  ::: :  :: : ::::::::  ::::  :: :  :::: :::::  : :   :::: ::: ::::::::::::::: :::::
3551209    AGTGTGGCCGCGCGCACGCTGCGCGGCGGCTCTTGGCTCTACGATCCCATGGGCGCCGGCTCGGCGTTCCGCCGCGGGTTCGCGTCCGACGGCTCTCTCCAGCACGACGGTTTCCGCTTTGCACTGAG (revcomp)
Template:  NC_013194.1 strand: - 2656562-2656700 ref: 2656563-2656701
Variable:  NC_013194.1 strand: - 2656868-2657006 alnlen 138 mutations 22 involve-A 17 involve-T 1

2656700    TGGGAAGGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGAACAACAACCGTGAGAACGCGCGCTGTGCCTACCGCAACAGCACCCATCCCGGCAACCGCAACAACAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCACAT (revcomp)
           :::  : : :::::::::::::::::::::::::::: ::  :::::::: :  :::::: :::::::::::: ::  : ::: ::::::: :::::  :  :::::::::::::::::::::::::::::::: :::
2657006    TGGCGATGGCCGGCGCGTGGTGCGCGGCGGCTCGTGGGACTTCAACCGTGGGCTCGCGCGTTGTGCCTACCGCGACTACCCCCTTCCCGGCGACCGCGGCCGCAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCCCAT (revcomp)
Template:  NC_013194.1 strand: - 2656562-2656700 ref: 2656563-2656701
Variable:  NC_013194.1 strand: + 2654977-2655115 alnlen 138 mutations 23 involve-A 19 involve-T 0
(on different strand)
2656700    TGGGAAGGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGAACAACAACCGTGAGAACGCGCGCTGTGCCTACCGCAACAGCACCCATCCCGGCAACCGCAACAACAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCACAT (revcomp)
           :::  : ::::::::::::::::::::::::::::::  :: :  ::::: :  :::::: ::::::: ::::  :  ::::::::::::: :::::  :: : :::::::::::::::::::::::::::::: :::
2654977    TGGCGATGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGGTCAGCGGCCGTGGGTTCGCGCGTTGTGCCTGCCGCGGCGTCACCCATCCCGGCTACCGCGGCAGCTATCTCGGCTTTCGGGTGTTGTGTGTCTCCCCCAT