Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_013194.1 strand: - 3552060-3552187 ref: 3552059-3552188

Variable:  NC_013194.1 strand: - 3554810-3554937 alnlen 127 mutations 16 involve-A 15 involve-T 0

GTGTGTCCGAGCGCGCGCTACGCGGCGGCTCCTGGAACAACGACGCCAGGAACGTCCGCTCGGCGAACCGCAACGCGAACGCGCCCGACAACGCCAACCAGGACGTCGGTTTCCGCTTTGCCCTGAG (Template)
GTGTGTCCGGGCGCGCGCTACGCGGCGGCTCCTGGTACGACTTCGCCTGGAGCGTCCGCTCGGCGTACCGCTTCGCGTACGCGCCCGGCAGCGCCGACCGGGGCGTCGGTTTCCGCTTTGCCCTGAG (Variable)
Template:  NC_013194.1 strand: - 3552060-3552188 ref: 3552059-3552188

Variable:  NC_013194.1 strand: - 3551081-3551209 alnlen 128 mutations 32 involve-A 17 involve-T 3

AGTGTGTCCGAGCGCGCGCTACGCGGCGGCTCCTGGAACAACGACGCCAGGAACGTCCGCTCGGCGAACCGCAACGCGAACGCGCCCGACAACGCCAACCAGGACGTCGGTTTCCGCTTTGCCCTGAG (Template)
AGTGTGGCCGCGCGCACGCTGCGCGGCGGCTCTTGGCTCTACGATCCCATGGGCGCCGGCTCGGCGTTCCGCCGCGGGTTCGCGTCCGACGGCTCTCTCCAGCACGACGGTTTCCGCTTTGCACTGAG (Variable)
Template:  NC_013194.1 strand: - 2656562-2656700 ref: 2656563-2656701

Variable:  NC_013194.1 strand: - 2656868-2657006 alnlen 138 mutations 22 involve-A 17 involve-T 1

TGGGAAGGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGAACAACAACCGTGAGAACGCGCGCTGTGCCTACCGCAACAGCACCCATCCCGGCAACCGCAACAACAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCACAT (Template)
TGGCGATGGCCGGCGCGTGGTGCGCGGCGGCTCGTGGGACTTCAACCGTGGGCTCGCGCGTTGTGCCTACCGCGACTACCCCCTTCCCGGCGACCGCGGCCGCAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCCCAT (Variable)
Template:  NC_013194.1 strand: - 2656562-2656700 ref: 2656563-2656701

Variable:  NC_013194.1 strand: + 2654977-2655115 alnlen 138 mutations 23 involve-A 19 involve-T 0

TGGGAAGGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGAACAACAACCGTGAGAACGCGCGCTGTGCCTACCGCAACAGCACCCATCCCGGCAACCGCAACAACAATCTCGGCTTTCGGGTGTTGTGTGTCTCCCACAT (Template)
TGGCGATGTCCGGCGCGTGGTGCGCGGCGGCTCGTGGGTCAGCGGCCGTGGGTTCGCGCGTTGTGCCTGCCGCGGCGTCACCCATCCCGGCTACCGCGGCAGCTATCTCGGCTTTCGGGTGTTGTGTGTCTCCCCCAT (Variable)