Template:  NC_015510.1 strand: + 5459860-5459981 ref: 5459860-5459981
Variable:  NC_015510.1 strand: + 5457693-5457814 alnlen 121 mutations 22 involve-A 21 involve-T 0

5459860    GGCTCCAACCGTGTTAACCGTGGCGGATCGTGGAACAACAACCCGATCAACGCGCGCGTGGCCAATCGCAACAACAACACGCCGGATAACCGCAACAATAATATCGGTTTTCGCCTAGCCA 
           ::::::  :::::::  ::::::::::::::::  : :: ::::: ::: ::::::::::::: ::::: :: ::  ::::::::::  :::: :: ::  :::::::::::: :::::::
5457693    GGCTCCCTCCGTGTTCGCCGTGGCGGATCGTGGTTCTACTACCCGTTCAGCGCGCGCGTGGCCGATCGCTACGACGTCACGCCGGATCGCCGCGACGATGGTATCGGTTTTCGTCTAGCCA 
Template:  NC_015510.1 strand: + 5459860-5459956 ref: 5459860-5459981
Variable:  NC_015510.1 strand: - 2743776-2743872 alnlen 96 mutations 23 involve-A 18 involve-T 2
(on different strand)
5459860    GGCTCCAACCGTGTTAACCGTGGCGGATCGTGGAACAACAACCCGATCAACGCGCGCGTGGCCAATCGCAACAACAACACGCCGGATAACCGCAAC 
           ::::::  :::::::::::::::::::::::::: :: :  ::::::: ::::::: :::::: : ::   :  : :: : ::::    :::: ::
2743872    GGCTCCCTCCGTGTTAACCGTGGCGGATCGTGGAGCAGCCGCCCGATCTACGCGCGGGTGGCCTACCGTCGCCTCGACTCCCCGGGCCTCCGCGAC (revcomp)