Color scheme: A-to-N substitutions are highlighted in yellow; other substitutions in gray
Template:  NC_015510.1 strand: + 5459860-5459981 ref: 5459860-5459981

Variable:  NC_015510.1 strand: + 5457693-5457814 alnlen 121 mutations 22 involve-A 21 involve-T 0

GGCTCCAACCGTGTTAACCGTGGCGGATCGTGGAACAACAACCCGATCAACGCGCGCGTGGCCAATCGCAACAACAACACGCCGGATAACCGCAACAATAATATCGGTTTTCGCCTAGCCA (Template)
GGCTCCCTCCGTGTTCGCCGTGGCGGATCGTGGTTCTACTACCCGTTCAGCGCGCGCGTGGCCGATCGCTACGACGTCACGCCGGATCGCCGCGACGATGGTATCGGTTTTCGTCTAGCCA (Variable)
Template:  NC_015510.1 strand: + 5459860-5459956 ref: 5459860-5459981

Variable:  NC_015510.1 strand: - 2743776-2743872 alnlen 96 mutations 23 involve-A 18 involve-T 2

GGCTCCAACCGTGTTAACCGTGGCGGATCGTGGAACAACAACCCGATCAACGCGCGCGTGGCCAATCGCAACAACAACACGCCGGATAACCGCAAC (Template)
GGCTCCCTCCGTGTTAACCGTGGCGGATCGTGGAGCAGCCGCCCGATCTACGCGCGGGTGGCCTACCGTCGCCTCGACTCCCCGGGCCTCCGCGAC (Variable)